Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6237

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6236: 14604 - Hypothetical Protein, at 319520 to 321215 14604 mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321480 to 324944 14605 mRNA_6238: 14606 - K13205 AAR2, C20orf4 A1 cistron-splicing factor AAR2, at 325534 to 327076 14606

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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320,495 - 14604 mRNA_6236 0.57 -1.1
320,525 - 14604 mRNA_6236 0.59 -1.0
320,626 + 14604 mRNA_6236 0.65 3.3
320,765 - 14604 mRNA_6236 0.73 0.3
320,924 + 14604 mRNA_6236 0.83 -0.2
321,070 + -0.2
321,071 + 0.6
321,076 - 0.4
321,214 + 2.0
321,217 + -1.5
321,230 + -0.2
321,239 - 0.5
321,385 + 0.2
321,513 - 0.4
321,655 - 2.5
321,976 - 14605 mRNA_6237 0.14 -2.2
322,115 + 14605 mRNA_6237 0.18 0.7
322,147 + 14605 mRNA_6237 0.19 0.4
322,263 + 14605 mRNA_6237 0.23 -0.2
322,429 + 14605 mRNA_6237 0.27 0.1
322,640 + 14605 mRNA_6237 0.33 -0.2
322,990 + 14605 mRNA_6237 0.44 -0.2
323,105 - 14605 mRNA_6237 0.47 0.3
323,293 + 14605 mRNA_6237 0.52 -0.3
323,328 - 14605 mRNA_6237 0.53 -0.5
323,563 + 14605 mRNA_6237 0.60 0.8
323,667 + 14605 mRNA_6237 0.63 1.0
323,703 + 14605 mRNA_6237 0.64 1.4
323,758 + 14605 mRNA_6237 0.66 -0.5
323,834 + 14605 mRNA_6237 0.68 0.5
324,167 - 14605 mRNA_6237 0.78 0.9
324,271 - 14605 mRNA_6237 0.81 1.5
324,386 - 14605 mRNA_6237 0.84 0.2
324,411 + 14605 mRNA_6237 0.85 0.4
324,412 - 14605 mRNA_6237 0.85 0.6
324,428 + 14605 mRNA_6237 0.85 0.3
324,552 + 14605 mRNA_6237 0.89 -0.0
324,968 + 1.9
324,991 - 3.7
325,002 - 0.1
325,127 - 0.5
325,159 + 0.8
325,292 - 0.6
325,297 + 0.3
325,308 + 0.6
325,424 - -0.1
325,441 - 0.2
325,448 - 0.2
325,460 - 0.9
325,462 - -0.2
325,463 + 2.2
325,470 + 1.0
325,473 - 0.1
325,481 + 0.6
325,495 + -2.4
325,533 - -0.5
325,556 - 1.8
325,574 + 0.8
325,598 + -0.6