Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6234

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6234: 14602 - K00318 PRODH proline dehydrogenase, at 315731 to 317718 14602 mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318135 to 318876 14603

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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315,055 - 0.1
315,070 + 1.8
315,070 + 0.9
315,335 + 1.1
315,342 - 0.5
315,345 - 0.9
315,346 + 0.2
315,346 + -0.2
315,372 - 1.1
315,381 - -1.7
315,385 - 1.2
315,486 + -0.5
315,517 + 1.2
315,527 + -1.1
315,539 + -0.3
315,578 - 0.0
315,638 - -0.4
315,652 - -0.3
315,656 - 0.3
315,662 + -0.7
315,665 + 1.0
315,665 - 0.4
315,667 - 0.2
315,670 + 0.0
315,671 + 1.0
315,673 + 0.3
315,673 + 0.5
315,676 + 2.0
315,686 - -1.2
315,939 - 14602 mRNA_6234 0.10 -0.3
315,967 + 14602 mRNA_6234 0.12 -0.1
315,986 + 14602 mRNA_6234 0.13 0.1
316,121 + 14602 mRNA_6234 0.20 1.2
316,392 - 14602 mRNA_6234 0.33 0.5
316,418 + 14602 mRNA_6234 0.35 -0.2
316,850 - 14602 mRNA_6234 0.56 0.9
316,874 + 14602 mRNA_6234 0.57 -1.2
316,880 + 14602 mRNA_6234 0.58 1.3
317,036 - 14602 mRNA_6234 0.66 1.4
317,036 - 14602 mRNA_6234 0.66 0.4
317,601 + -0.1
317,770 - -1.2