Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6231

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306149 to 307289 14598 mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307619 to 308722 14599 mRNA_6232: 14600 - K17450 ACO2 homoaconitase, at 308954 to 311929 14600

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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306,873 - 14598 mRNA_6230 0.63 1.2
306,875 + 14598 mRNA_6230 0.64 1.1
306,883 + 14598 mRNA_6230 0.64 -0.5
306,884 + 14598 mRNA_6230 0.64 -0.2
307,019 - 14598 mRNA_6230 0.76 -0.3
307,289 - -0.3
307,427 - -0.2
307,443 - -0.8
307,444 + -0.2
307,454 + 0.6
307,576 - 0.1
307,576 - 1.2
307,589 + -1.8
307,594 - 0.3
307,600 + 1.0
307,605 - -0.7
308,574 + 14599 mRNA_6231 0.87 0.2
308,591 - 14599 mRNA_6231 0.88 0.2
308,605 + 14599 mRNA_6231 0.89 0.6
308,732 - -0.4
308,733 + 1.0
308,737 - -0.3
308,825 - -0.4
308,828 - 1.7
308,840 + -1.2
308,860 + 0.7
308,870 + 0.0
308,911 + 1.0
309,032 - -1.9
309,040 + 2.4
309,043 + 0.3
309,046 - -0.2
309,075 + 2.3
309,192 - -0.0
309,201 + -1.0
309,213 + 0.5
309,383 - 14600 mRNA_6232 0.14 0.3
309,511 - 14600 mRNA_6232 0.19 1.7
309,633 + 14600 mRNA_6232 0.23 0.2