Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6222

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6221: 14589 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695, at 283422 to 285141 14589 mRNA_6222: 14590 - K07088 K07088 uncharacterized protein, at 285427 to 287812 14590 mRNA_6223: 14591 - BLAST acetyl-coenzyme A synthetase [Rhizoctonia solani AG-1..., at 288357 to 288729 14591

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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284,527 - 14589 mRNA_6221 0.64 0.7
284,601 + 14589 mRNA_6221 0.69 0.1
284,701 + 14589 mRNA_6221 0.74 -0.1
284,849 + 14589 mRNA_6221 0.83 -1.0
284,973 - 0.5
285,293 - 1.2
285,310 - 1.9
285,458 - 1.0
286,323 - 14590 mRNA_6222 0.38 0.2
286,323 - 14590 mRNA_6222 0.38 3.0
286,377 - 14590 mRNA_6222 0.40 -0.8
286,612 - 14590 mRNA_6222 0.50 0.1
286,629 - 14590 mRNA_6222 0.50 1.9
287,224 + 14590 mRNA_6222 0.75 0.4
287,376 - 14590 mRNA_6222 0.82 0.2
287,382 + 14590 mRNA_6222 0.82 -1.1
287,793 - 0.4
288,060 + 1.0
288,060 - 0.9
288,078 - 0.3
288,079 + 0.5
288,086 + -0.4
288,089 + 1.3
288,110 - -0.6
288,113 - 1.8
288,117 - -0.9
288,129 - 2.6
288,229 + -0.1
288,246 - -0.1
288,387 - -0.9
288,536 - 14591 mRNA_6223 0.48 0.9
288,548 + 14591 mRNA_6223 0.51 -0.4
288,553 + 14591 mRNA_6223 0.53 -0.6
288,558 + 14591 mRNA_6223 0.54 -0.4
288,558 + 14591 mRNA_6223 0.54 -3.7
288,561 - 14591 mRNA_6223 0.55 0.5
288,563 + 14591 mRNA_6223 0.55 2.4
288,565 - 14591 mRNA_6223 0.56 0.4
288,566 + 14591 mRNA_6223 0.56 -0.8
288,568 + 14591 mRNA_6223 0.57 -1.1
288,573 + 14591 mRNA_6223 0.58 1.3
288,608 + 14591 mRNA_6223 0.67 -0.3
288,693 - 1.0
288,704 + -1.2
288,707 + -0.6
288,715 + 0.2
288,717 + 0.3
288,718 - 2.3