Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6198

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227158 to 229573 14565 mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229572 to 230681 14566 mRNA_6199: 14567 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 230911 to 232731 14567

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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229,579 - 1.2
229,586 + -1.7
229,592 + -0.2
229,596 - 1.0
229,747 + 14566 mRNA_6198 0.16 0.9
229,752 - 14566 mRNA_6198 0.16 0.9
229,767 + 14566 mRNA_6198 0.18 1.0
229,863 + 14566 mRNA_6198 0.26 -2.1
230,266 + 14566 mRNA_6198 0.63 0.0
230,345 + 14566 mRNA_6198 0.70 0.1
230,751 + 0.5
231,043 - 0.2
231,085 - 0.4
231,125 + 14567 mRNA_6199 0.12 0.3
231,212 - 14567 mRNA_6199 0.17 -1.1
231,310 - 14567 mRNA_6199 0.22 0.8
231,435 - 14567 mRNA_6199 0.29 -1.6
231,605 + 14567 mRNA_6199 0.38 -0.3