Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6177

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182326 to 182954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183334 to 184793 14545 mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185787 to 186902 14546

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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182,958 - -0.3
182,973 + 1.6
183,109 - -0.2
183,124 - -1.4
183,126 + 1.4
183,255 - 1.1
183,258 - -0.3
183,267 + 0.6
183,269 - -0.1
183,270 - -0.2
183,280 - 1.3
183,397 - 2.8
183,410 + 2.1
183,421 - 1.6
183,551 - 14545 mRNA_6177 0.15 0.3
183,560 + 14545 mRNA_6177 0.15 0.2
183,572 - 14545 mRNA_6177 0.16 1.8
183,572 - 14545 mRNA_6177 0.16 0.1
183,588 + 14545 mRNA_6177 0.17 -0.1
183,734 - 14545 mRNA_6177 0.27 -0.5
183,877 + 14545 mRNA_6177 0.37 0.6
184,020 + 14545 mRNA_6177 0.47 0.7
184,034 - 14545 mRNA_6177 0.48 0.9
184,035 + 14545 mRNA_6177 0.48 0.1
184,062 - 14545 mRNA_6177 0.50 0.0
184,338 - 14545 mRNA_6177 0.69 -2.0
184,464 + 14545 mRNA_6177 0.77 0.4
184,627 + 14545 mRNA_6177 0.89 -0.6
184,734 + 0.6
184,743 - 1.1
185,147 - -0.1
185,196 + 1.5
185,324 - 1.8
185,640 + 1.1