Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6165

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149620 to 151505 14532 mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151697 to 155852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156004 to 157222 14534

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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151,574 - -1.5
151,868 - -0.6
151,895 - -0.5
152,793 - 14533 mRNA_6165 0.26 1.3
152,802 + 14533 mRNA_6165 0.27 1.0
153,077 + 14533 mRNA_6165 0.33 -0.4
153,088 + 14533 mRNA_6165 0.33 0.1
153,209 - 14533 mRNA_6165 0.36 1.0
153,351 - 14533 mRNA_6165 0.40 -0.9
153,361 + 14533 mRNA_6165 0.40 -2.1
153,365 + 14533 mRNA_6165 0.40 -1.3
153,397 + 14533 mRNA_6165 0.41 -0.9
153,399 - 14533 mRNA_6165 0.41 1.5
153,405 + 14533 mRNA_6165 0.41 0.5
153,406 + 14533 mRNA_6165 0.41 1.6
153,417 + 14533 mRNA_6165 0.41 -0.4
153,421 + 14533 mRNA_6165 0.41 -0.2
153,477 - 14533 mRNA_6165 0.43 -0.1
153,485 + 14533 mRNA_6165 0.43 -0.6
153,487 + 14533 mRNA_6165 0.43 0.4
153,488 - 14533 mRNA_6165 0.43 -0.4
153,492 - 14533 mRNA_6165 0.43 1.6
153,941 - 14533 mRNA_6165 0.54 0.6
153,945 + 14533 mRNA_6165 0.54 0.9
154,171 - 14533 mRNA_6165 0.60 -0.6
154,228 - 14533 mRNA_6165 0.61 -1.6
154,266 - 14533 mRNA_6165 0.62 1.7
154,778 - 14533 mRNA_6165 0.74 0.5
154,797 + 14533 mRNA_6165 0.75 -0.3
155,074 - 14533 mRNA_6165 0.81 -0.3
155,074 - 14533 mRNA_6165 0.81 -0.5
155,128 - 14533 mRNA_6165 0.83 2.1
155,185 - 14533 mRNA_6165 0.84 -0.5
155,224 - 14533 mRNA_6165 0.85 -0.5
155,226 + 14533 mRNA_6165 0.85 0.4
155,337 - 14533 mRNA_6165 0.88 1.9
155,504 + 1.9
155,627 + 4.3
155,645 - -1.3
155,652 + -0.4
155,661 - 0.2
155,822 + -0.4
155,823 + 0.3
155,832 + 0.3
155,926 - 2.1
155,926 - 0.4
155,931 - -0.4
155,956 + -1.1
155,960 - 2.9
155,970 - 2.6
156,148 + 14534 mRNA_6166 0.12 0.8
156,252 - 14534 mRNA_6166 0.20 0.6
156,729 - 14534 mRNA_6166 0.59 0.7
156,832 - 14534 mRNA_6166 0.68 2.0