Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6136

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6135: 14503 - K08614 ADAM28 disintegrin and metalloproteinase domain-containing protein 28, at 90272 to 93233 14503 mRNA_6136: 14504 - Hypothetical Protein, at 93449 to 95989 14504 mRNA_6137: 14505 - KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase, at 96783 to 98967 14505

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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92,506 - 14503 mRNA_6135 0.75 0.7
92,511 + 14503 mRNA_6135 0.76 -1.4
92,540 - 14503 mRNA_6135 0.77 1.3
92,694 - 14503 mRNA_6135 0.82 -1.9
92,820 + 14503 mRNA_6135 0.86 0.6
93,147 + 0.3
93,225 + -0.1
93,266 + 0.3
93,286 - 0.1
93,575 + 1.8
93,832 + 14504 mRNA_6136 0.15 -0.1
94,179 + 14504 mRNA_6136 0.29 1.2
94,589 - 14504 mRNA_6136 0.45 0.7
94,609 + 14504 mRNA_6136 0.46 0.0
94,895 - 14504 mRNA_6136 0.57 -2.2
95,438 + 14504 mRNA_6136 0.78 -0.4
95,603 + 14504 mRNA_6136 0.85 -0.3
95,761 + -0.7
95,904 + 0.5
96,029 - 0.5
96,029 - -0.8
96,040 + 1.1
96,074 - 1.1
96,077 - 0.5
96,078 + 1.0
96,084 - 0.4
96,092 - -1.4
96,096 + 0.9
96,102 + 0.4
96,103 + -0.3
96,103 + -0.5
96,107 - -0.0
96,113 - 0.1
96,117 - 0.7
96,122 + 0.1
96,135 - 1.1
96,148 - -0.9
96,201 - 0.5
96,206 - 0.3
96,226 + -0.2
96,226 + -0.7
96,242 - 0.8
96,322 - 1.4
96,346 - 0.4
96,395 + 0.9
96,399 - 1.7
96,406 + 0.3
96,503 - 0.3
96,559 - 0.3
96,560 - 0.1
96,572 - 0.5
96,581 + -0.1
96,585 + -0.1
96,605 + -2.5
96,759 + 0.2
96,767 - -0.3