Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6113

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17714 to 19844 14480 mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19972 to 24805 14481 mRNA_6114: 14482 - Hypothetical Protein, at 25220 to 26095 14482

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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19,160 + 14480 mRNA_6112 0.68 1.3
19,160 + 14480 mRNA_6112 0.68 0.1
19,242 + 14480 mRNA_6112 0.72 -1.3
19,332 - 14480 mRNA_6112 0.76 0.9
19,368 + 14480 mRNA_6112 0.78 0.6
19,396 + 14480 mRNA_6112 0.79 -0.5
19,505 + 14480 mRNA_6112 0.84 -1.0
19,511 + 14480 mRNA_6112 0.84 -0.9
19,589 - 14480 mRNA_6112 0.88 0.2
19,615 - 14480 mRNA_6112 0.89 -0.2
19,762 - 0.6
19,763 + 0.2
19,767 - -0.5
19,778 - -0.1
19,789 + 0.2
19,796 + 0.6
19,916 - -0.5
19,922 + 0.1
19,926 + 0.5
19,930 + 0.5
19,932 + 0.1
19,946 + 0.7
20,080 + 0.3
20,205 - 1.5
20,470 + 14481 mRNA_6113 0.10 2.4
20,606 - 14481 mRNA_6113 0.13 2.2
20,828 - 14481 mRNA_6113 0.18 -0.8
21,984 + 14481 mRNA_6113 0.42 0.9
22,046 + 14481 mRNA_6113 0.43 3.2
22,179 + 14481 mRNA_6113 0.46 1.0
22,314 + 14481 mRNA_6113 0.48 -0.4
22,478 + 14481 mRNA_6113 0.52 1.2
22,533 + 14481 mRNA_6113 0.53 0.9
22,680 - 14481 mRNA_6113 0.56 0.6
22,881 - 14481 mRNA_6113 0.60 -1.0
22,887 + 14481 mRNA_6113 0.60 0.0
22,887 + 14481 mRNA_6113 0.60 0.4
22,985 - 14481 mRNA_6113 0.62 3.3
23,003 - 14481 mRNA_6113 0.63 -2.5
23,010 - 14481 mRNA_6113 0.63 2.4
23,010 - 14481 mRNA_6113 0.63 -0.6
23,010 - 14481 mRNA_6113 0.63 1.8
23,015 - 14481 mRNA_6113 0.63 0.3
23,016 + 14481 mRNA_6113 0.63 1.2
23,017 - 14481 mRNA_6113 0.63 -0.3
23,301 + 14481 mRNA_6113 0.69 -0.5
23,310 - 14481 mRNA_6113 0.69 -0.0
23,594 - 14481 mRNA_6113 0.75 1.5
23,673 + 14481 mRNA_6113 0.77 -0.5
23,769 + 14481 mRNA_6113 0.79 0.2
23,770 + 14481 mRNA_6113 0.79 1.0
23,937 - 14481 mRNA_6113 0.82 1.1
24,044 - 14481 mRNA_6113 0.84 1.1
24,083 + 14481 mRNA_6113 0.85 -1.3
24,160 + 14481 mRNA_6113 0.87 0.7
24,221 - 14481 mRNA_6113 0.88 1.3
24,280 + 14481 mRNA_6113 0.89 1.2
24,283 - 14481 mRNA_6113 0.89 -1.5
24,327 + 0.6
24,337 - 1.1
24,337 - -1.2
24,344 + -1.5
24,392 - -0.6
24,441 + -0.4
24,495 - 2.9
24,552 - 0.2
24,555 + -2.2
24,639 + 0.3
24,665 - -1.5
24,666 - -1.9
24,805 + 1.7
25,098 + -1.0
25,124 - 0.5
25,227 + -2.0
25,495 + 14482 mRNA_6114 0.31 0.1
25,675 + 14482 mRNA_6114 0.52 -1.2
25,801 - 14482 mRNA_6114 0.66 0.9