Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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39 + -1.7
39 + -0.5
40 + 0.8
40 + 1.5
40 + 2.5
41 + 0.2
56 + 1.7
56 + 2.4
56 + 1.0
58 + 1.3
59 + 0.0
59 + 2.2
62 - -0.9
65 - -1.2
77 + -1.6
84 + 1.7
102 + -0.6
137 + -1.3
151 + 0.3
200 + 1.7
208 + 1.0
216 + 0.4
229 + -0.0
348 - 1.5
430 + -0.5
498 - -0.7
502 - 1.2
685 + 14474 mRNA_6106 0.13 1.7
747 + 14474 mRNA_6106 0.15 -3.2
755 + 14474 mRNA_6106 0.15 -1.0
946 + 14474 mRNA_6106 0.21 1.4
975 + 14474 mRNA_6106 0.22 -0.0
1,245 + 14474 mRNA_6106 0.30 0.7
2,125 + 14474 mRNA_6106 0.55 -0.1
2,839 - 14474 mRNA_6106 0.76 0.7
3,125 - 14474 mRNA_6106 0.84 1.2
3,248 - 14474 mRNA_6106 0.88 0.0
3,570 + -1.9
3,665 + 1.2
3,692 + 0.9
3,706 + -0.9
3,726 + 2.0
3,820 + -0.9
3,853 + -0.4
3,859 + 2.2
3,909 - 0.7
3,929 - -1.1