Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6059

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6058: 14426 - SUPERFAMILY--SSF52047, at 1541089 to 1542626 14426 mRNA_6059: 14427 - SUPERFAMILY--SSF52047, at 1543443 to 1544992 14427 mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1545467 to 1548419 14428

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,542,519 + 0.6
1,542,525 - 0.5
1,542,667 - 2.4
1,542,811 - 1.4
1,542,812 + 2.1
1,542,950 + 1.7
1,542,985 + 1.1
1,542,991 + -0.6
1,543,117 - 0.2
1,543,134 + 0.5
1,543,229 + 0.2
1,543,230 - -1.0
1,543,291 + 0.7
1,543,478 + -0.8
1,543,569 - 0.4
1,543,689 - 14427 mRNA_6059 0.16 2.4
1,543,741 - 14427 mRNA_6059 0.19 0.4
1,543,834 + 14427 mRNA_6059 0.25 0.7
1,543,943 - 14427 mRNA_6059 0.32 1.6
1,544,001 - 14427 mRNA_6059 0.36 -0.1
1,544,084 - 14427 mRNA_6059 0.41 0.1
1,544,126 - 14427 mRNA_6059 0.44 0.0
1,544,138 - 14427 mRNA_6059 0.45 1.5
1,544,144 + 14427 mRNA_6059 0.45 0.4
1,544,187 - 14427 mRNA_6059 0.48 -0.0
1,544,188 + 14427 mRNA_6059 0.48 -0.3
1,544,192 + 14427 mRNA_6059 0.48 4.2
1,544,282 - 14427 mRNA_6059 0.54 -0.5
1,544,291 - 14427 mRNA_6059 0.55 -1.5
1,544,291 - 14427 mRNA_6059 0.55 -0.2
1,544,295 + 14427 mRNA_6059 0.55 0.6
1,544,450 + 14427 mRNA_6059 0.65 -1.0
1,544,474 + 14427 mRNA_6059 0.67 0.2
1,544,551 - 14427 mRNA_6059 0.71 1.5
1,544,584 + 14427 mRNA_6059 0.74 0.7
1,544,590 + 14427 mRNA_6059 0.74 -0.2
1,544,856 + -0.3
1,544,856 + -1.6
1,544,887 + 2.0
1,544,943 - -0.5
1,544,994 + 1.5
1,545,035 - 2.2
1,545,042 + -1.3
1,545,051 + 0.9
1,545,177 - 1.1
1,545,206 + 1.6
1,545,324 + 0.9
1,545,355 - 0.5