Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6055

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6054: 14422 - Hypothetical Protein, at 1530562 to 1531285 14422 mRNA_6055: 14423 - Hypothetical Protein, at 1531470 to 1536936 14423 mRNA_6056: 14424 - K13996 EPS1 protein disulfide-isomerase, at 1537539 to 1540392 14424

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,530,630 + -1.5
1,530,639 - 14422 mRNA_6054 0.11 0.6
1,530,649 - 14422 mRNA_6054 0.12 -1.4
1,530,666 + 14422 mRNA_6054 0.14 1.3
1,530,757 - 14422 mRNA_6054 0.27 -0.4
1,530,777 - 14422 mRNA_6054 0.30 -0.1
1,530,923 - 14422 mRNA_6054 0.50 -0.9
1,530,980 - 14422 mRNA_6054 0.58 -0.5
1,531,033 - 14422 mRNA_6054 0.65 -0.6
1,531,040 + 14422 mRNA_6054 0.66 -0.1
1,531,056 + 14422 mRNA_6054 0.68 -0.4
1,531,111 + 14422 mRNA_6054 0.76 -0.1
1,531,118 + 14422 mRNA_6054 0.77 -0.7
1,531,216 + 0.5
1,531,239 + -0.6
1,531,248 - -3.1
1,531,379 - 0.7
1,531,393 + -0.1
1,531,424 + -1.8
1,531,483 - -0.7
1,531,539 + 0.1
1,531,583 + 1.8
1,531,586 - 2.5
1,531,942 - -1.9
1,531,955 + 0.9
1,532,256 - 14423 mRNA_6055 0.14 0.3
1,532,363 + 14423 mRNA_6055 0.16 -0.9
1,532,415 - 14423 mRNA_6055 0.17 -0.1
1,532,705 - 14423 mRNA_6055 0.23 -0.1
1,532,705 - 14423 mRNA_6055 0.23 -0.5
1,532,747 - 14423 mRNA_6055 0.23 0.0
1,532,753 + 14423 mRNA_6055 0.23 0.3
1,532,766 + 14423 mRNA_6055 0.24 -0.7
1,532,797 + 14423 mRNA_6055 0.24 1.4
1,532,984 + 14423 mRNA_6055 0.28 1.2
1,533,064 + 14423 mRNA_6055 0.29 2.5
1,533,079 + 14423 mRNA_6055 0.29 1.3
1,533,107 + 14423 mRNA_6055 0.30 0.5
1,533,394 + 14423 mRNA_6055 0.35 0.7
1,533,465 - 14423 mRNA_6055 0.36 1.3
1,533,642 - 14423 mRNA_6055 0.40 -1.0
1,533,799 - 14423 mRNA_6055 0.43 -0.0
1,533,882 - 14423 mRNA_6055 0.44 1.8
1,534,028 - 14423 mRNA_6055 0.47 0.6
1,534,115 - 14423 mRNA_6055 0.48 0.7
1,534,134 - 14423 mRNA_6055 0.49 0.4
1,534,334 + 14423 mRNA_6055 0.52 -2.5
1,534,526 + 14423 mRNA_6055 0.56 -0.6
1,534,667 + 14423 mRNA_6055 0.58 -0.7
1,534,936 + 14423 mRNA_6055 0.63 -0.2
1,534,949 - 14423 mRNA_6055 0.64 0.5
1,534,988 - 14423 mRNA_6055 0.64 0.4
1,535,048 - 14423 mRNA_6055 0.65 1.5
1,535,266 + 14423 mRNA_6055 0.69 -0.5
1,535,307 + 14423 mRNA_6055 0.70 -1.0
1,535,477 - 14423 mRNA_6055 0.73 -0.6
1,535,491 + 14423 mRNA_6055 0.74 -1.9
1,535,503 + 14423 mRNA_6055 0.74 1.1
1,535,675 + 14423 mRNA_6055 0.77 1.2
1,535,695 + 14423 mRNA_6055 0.77 0.0
1,535,695 - 14423 mRNA_6055 0.77 1.5
1,535,695 + 14423 mRNA_6055 0.77 -1.7
1,535,698 - 14423 mRNA_6055 0.77 0.2
1,536,253 - 14423 mRNA_6055 0.87 -0.6
1,536,401 - 0.0
1,536,993 + -0.1
1,537,004 - 1.2
1,537,115 + 0.8
1,537,129 - -0.5
1,537,180 + -0.3
1,537,180 + 0.1
1,537,180 + 1.1
1,537,226 + 0.4
1,537,257 - -0.2
1,537,296 - 0.0
1,537,332 - 1.7
1,537,430 + 0.3
1,537,448 + 0.7
1,537,449 - -0.1
1,537,451 - -0.7
1,537,610 + 3.2
1,537,613 - -0.6
1,537,705 - 0.0
1,537,705 - 1.4
1,537,728 - -0.1
1,537,846 + 14424 mRNA_6056 0.11 0.4
1,537,874 - 14424 mRNA_6056 0.12 0.3