Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6046

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6045: 14413 - SUPERFAMILY--SSF54928, at 1512060 to 1513119 14413 mRNA_6046: 14414 - Hypothetical Protein, at 1513700 to 1515000 14414 mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1515323 to 1516944 14415

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,512,890 + 14413 mRNA_6045 0.78 -0.2
1,512,897 + 14413 mRNA_6045 0.79 0.4
1,513,009 - 14413 mRNA_6045 0.90 0.6
1,513,311 - 0.3
1,513,319 + 0.1
1,513,385 + -2.2
1,513,471 + -0.3
1,513,476 - 0.6
1,513,492 - 0.1
1,513,495 - 1.4
1,513,495 + -1.4
1,513,497 + -0.2
1,513,502 + 0.3
1,513,508 + -0.2
1,513,511 - 0.3
1,513,629 + 0.5
1,513,633 - 2.1
1,513,637 - -0.4
1,513,643 - -0.8
1,513,680 - 2.2
1,513,692 - 1.8
1,513,755 - 0.8
1,513,755 - 0.5
1,514,127 - 14414 mRNA_6046 0.33 3.3
1,514,380 + 14414 mRNA_6046 0.52 1.9
1,514,384 + 14414 mRNA_6046 0.53 2.2
1,514,384 - 14414 mRNA_6046 0.53 0.8
1,514,537 + 14414 mRNA_6046 0.64 0.5
1,514,798 - 14414 mRNA_6046 0.84 -2.4
1,514,800 - 14414 mRNA_6046 0.85 1.8
1,514,803 - 14414 mRNA_6046 0.85 -0.2
1,514,822 + 14414 mRNA_6046 0.86 -0.2
1,514,926 - 0.7
1,515,235 + 0.7
1,515,393 - 0.0
1,515,874 + 14415 mRNA_6047 0.34 -0.6