Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6001

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6000: 14368 - KOG2517 Ribulose kinase and related carbohydrate kinases, at 1423087 to 1425937 14368 mRNA_6001: 14369 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1426118 to 1427755 14369 mRNA_6002: 14370 - KOG4178 Soluble epoxide hydrolase, at 1428080 to 1429229 14370

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,425,327 - 14368 mRNA_6000 0.79 -0.7
1,425,341 - 14368 mRNA_6000 0.79 -0.5
1,425,342 + 14368 mRNA_6000 0.79 0.8
1,425,356 + 14368 mRNA_6000 0.80 1.0
1,425,499 - 14368 mRNA_6000 0.85 0.7
1,425,535 + 14368 mRNA_6000 0.86 -0.1
1,425,615 - 14368 mRNA_6000 0.89 -2.2
1,425,683 - -0.3
1,425,825 + 0.6
1,425,841 + 0.2
1,425,909 + 0.1
1,425,922 - 3.3
1,426,307 - 14369 mRNA_6001 0.12 1.2
1,426,499 - 14369 mRNA_6001 0.23 -0.3
1,426,510 + 14369 mRNA_6001 0.24 0.2
1,426,514 - 14369 mRNA_6001 0.24 0.1
1,426,527 + 14369 mRNA_6001 0.25 -0.7
1,426,692 + 14369 mRNA_6001 0.35 -1.5
1,426,778 - 14369 mRNA_6001 0.40 0.3
1,427,114 - 14369 mRNA_6001 0.61 -0.8
1,427,329 + 14369 mRNA_6001 0.74 0.7
1,427,395 + 14369 mRNA_6001 0.78 0.6
1,427,419 - 14369 mRNA_6001 0.79 0.7
1,427,502 - 14369 mRNA_6001 0.84 -1.3
1,427,520 + 14369 mRNA_6001 0.86 2.0
1,427,556 + 14369 mRNA_6001 0.88 -1.2
1,427,632 - 1.8
1,427,685 - 0.4
1,427,686 - -0.7
1,427,687 - 0.3
1,427,691 - 1.6
1,427,694 + -2.9
1,427,783 - 0.4
1,427,832 + -0.6
1,427,854 + -0.1
1,427,970 - 0.6
1,427,974 - -0.4
1,427,979 + 1.9
1,428,125 - 2.3
1,428,128 + 1.9
1,428,132 + 0.4
1,428,294 + 14370 mRNA_6002 0.19 -0.1
1,428,447 + 14370 mRNA_6002 0.32 1.3
1,428,576 + 14370 mRNA_6002 0.43 -2.3
1,428,716 - 14370 mRNA_6002 0.55 1.3