Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5999

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5998: 14366 - Hypothetical Protein, at 1414983 to 1417635 14366 mRNA_5999: 14367 - KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily, at 1417778 to 1422818 14367 mRNA_6000: 14368 - KOG2517 Ribulose kinase and related carbohydrate kinases, at 1423087 to 1425937 14368

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,417,182 + 14366 mRNA_5998 0.83 0.3
1,417,298 + 14366 mRNA_5998 0.87 -0.6
1,417,313 - 14366 mRNA_5998 0.88 -0.2
1,417,436 - 1.3
1,417,442 - 1.2
1,417,454 + -0.2
1,417,582 + 0.1
1,417,591 + -0.2
1,417,618 + 1.4
1,417,647 - 3.8
1,417,721 + -0.6
1,417,724 - -0.8
1,417,754 + 0.2
1,419,662 - 14367 mRNA_5999 0.37 0.6
1,419,751 - 14367 mRNA_5999 0.39 1.4
1,422,836 - 0.4
1,422,861 + 0.0
1,423,011 + 1.9
1,423,031 + 0.5
1,423,037 + -1.0
1,423,054 + 1.9
1,423,240 + 1.2
1,423,320 - 1.0
1,423,334 - 0.6
1,423,337 - -1.2
1,423,366 - 0.9
1,423,366 - 0.4
1,423,366 + 1.7
1,423,545 + 14368 mRNA_6000 0.16 0.6