Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5963

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5962: 14330 - Hypothetical Protein, at 1340346 to 1341615 14330 mRNA_5963: 14331 - Interpro F-box-like, at 1342059 to 1343538 14331 mRNA_5964: 14332 - Hypothetical Protein, at 1343767 to 1344081 14332 mRNA_5965: 14333 - Hypothetical Protein, at 1344159 to 1346250 14333

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,341,126 - 14330 mRNA_5962 0.61 0.5
1,341,206 + 14330 mRNA_5962 0.68 1.1
1,341,405 - 14330 mRNA_5962 0.83 0.8
1,341,419 + 14330 mRNA_5962 0.84 0.7
1,341,423 + 14330 mRNA_5962 0.85 0.2
1,341,519 - 0.6
1,341,553 - -0.4
1,341,555 + -0.4
1,341,590 + -0.7
1,341,591 + -1.8
1,341,698 - 1.2
1,341,862 + 2.7
1,341,870 + -0.2
1,341,881 + -0.2
1,341,981 - 2.3
1,341,987 + 1.3
1,342,008 - -0.5
1,342,271 + 14331 mRNA_5963 0.14 -0.1
1,342,427 - 14331 mRNA_5963 0.25 -0.2
1,342,456 - 14331 mRNA_5963 0.27 -0.1
1,342,539 + 14331 mRNA_5963 0.32 -1.3
1,342,718 - 14331 mRNA_5963 0.45 1.7
1,342,813 + 14331 mRNA_5963 0.51 -0.2
1,342,842 + 14331 mRNA_5963 0.53 2.1
1,342,872 + 14331 mRNA_5963 0.55 0.0
1,342,956 - 14331 mRNA_5963 0.61 -0.2
1,343,008 - 14331 mRNA_5963 0.64 -0.3
1,343,018 + 14331 mRNA_5963 0.65 -0.6
1,343,031 - 14331 mRNA_5963 0.66 -1.0
1,343,106 - 14331 mRNA_5963 0.71 0.2
1,343,111 + 14331 mRNA_5963 0.71 -0.1
1,343,126 - 14331 mRNA_5963 0.72 1.5
1,343,126 - 14331 mRNA_5963 0.72 -1.8
1,343,135 + 14331 mRNA_5963 0.73 1.6
1,343,139 + 14331 mRNA_5963 0.73 1.0
1,343,154 + 14331 mRNA_5963 0.74 -0.0
1,343,174 - 14331 mRNA_5963 0.75 -0.8
1,343,186 - 14331 mRNA_5963 0.76 -0.1
1,343,194 - 14331 mRNA_5963 0.77 1.0
1,343,302 - 14331 mRNA_5963 0.84 0.2
1,343,327 - 14331 mRNA_5963 0.86 2.9
1,343,409 + -0.3
1,343,438 - 0.0
1,343,449 - 0.0
1,343,453 + 1.3
1,343,588 + 0.5
1,343,644 - 0.5
1,343,763 + 0.4
1,343,778 - 1.8
1,343,839 + 14332 mRNA_5964 0.23 3.5
1,343,876 - 14332 mRNA_5964 0.35 1.6
1,343,890 - 14332 mRNA_5964 0.39 1.6
1,343,900 + 14332 mRNA_5964 0.42 0.6
1,343,902 + 14332 mRNA_5964 0.43 1.1
1,343,996 + 14332 mRNA_5964 0.73 -0.3
1,344,009 - 14332 mRNA_5964 0.77 -0.2
1,344,024 + 14332 mRNA_5964 0.82 0.9
1,344,031 - 14332 mRNA_5964 0.84 -0.7
1,344,043 + 14332 mRNA_5964 0.88 0.1
1,344,078 - 2.8
1,344,094 - 0.8
1,344,164 - 0.3
1,344,205 + 2.9
1,344,328 + -0.5
1,344,377 + 14333 mRNA_5965 0.10 -0.1