Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5961

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1334549 to 1337487 14327 mRNA_5960: 14328 - Hypothetical Protein, at 1337799 to 1338235 14328 mRNA_5961: 14329 - HMMPfam-F-box-like-PF12937, at 1338459 to 1339688 14329 mRNA_5962: 14330 - Hypothetical Protein, at 1340346 to 1341615 14330

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,337,703 + 0.4
1,337,914 + 14328 mRNA_5960 0.26 -0.2
1,338,010 - 14328 mRNA_5960 0.48 -0.2
1,338,108 - 14328 mRNA_5960 0.71 1.4
1,338,117 - 14328 mRNA_5960 0.73 -1.0
1,338,160 + 14328 mRNA_5960 0.83 0.4
1,338,163 + 14328 mRNA_5960 0.83 0.0
1,338,703 - 14329 mRNA_5961 0.20 1.9
1,338,801 + 14329 mRNA_5961 0.28 -0.1
1,338,835 + 14329 mRNA_5961 0.31 -1.3
1,338,886 - 14329 mRNA_5961 0.35 -1.0
1,338,886 - 14329 mRNA_5961 0.35 0.6
1,338,950 + 14329 mRNA_5961 0.40 0.2
1,338,950 + 14329 mRNA_5961 0.40 1.5
1,339,036 + 14329 mRNA_5961 0.47 0.7
1,339,153 + 14329 mRNA_5961 0.56 0.4
1,339,357 - 14329 mRNA_5961 0.73 1.1
1,339,671 - 0.8
1,339,683 - 2.4
1,339,684 + -1.0
1,339,788 - 0.8
1,339,792 - 0.4
1,339,925 + 0.9
1,339,925 + 0.0
1,339,952 - 2.3
1,339,954 + 1.8
1,339,967 + -1.5
1,339,967 + -0.9
1,340,027 - 0.1
1,340,047 + 1.2
1,340,250 + 0.1
1,340,423 - -0.1