Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5935

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1269000 to 1270285 14302 mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1270620 to 1271852 14303 mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1272303 to 1276279 14304

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,269,723 - 14302 mRNA_5934 0.56 -0.5
1,269,783 + 14302 mRNA_5934 0.61 -0.9
1,270,024 - 14302 mRNA_5934 0.80 -1.1
1,270,157 - 1.2
1,270,171 - 0.0
1,270,173 + 0.2
1,270,312 - -0.5
1,270,327 - 0.1
1,270,344 + 1.0
1,270,386 + -0.5
1,270,448 + -1.2
1,270,461 + 1.0
1,270,467 - -0.7
1,270,486 + 1.7
1,270,497 + 0.7
1,270,669 + -0.9
1,270,787 - 14303 mRNA_5935 0.14 3.5
1,270,916 - 14303 mRNA_5935 0.24 0.7
1,272,142 - 1.4
1,272,419 + 1.5
1,272,527 + 1.8
1,272,567 - -1.5