Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5861

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1104948 to 1105402 14228 mRNA_5861: 14229 - K16261 YAT yeast amino acid transporter, at 1105736 to 1108814 14229

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,104,941 - 1.0
1,104,944 + 0.9
1,105,054 - 14228 mRNA_5860 0.23 0.4
1,105,092 + 14228 mRNA_5860 0.32 0.2
1,105,254 + 14228 mRNA_5860 0.67 1.9
1,105,380 - 0.1
1,105,384 + -0.2
1,105,389 - 0.7
1,105,513 - 0.4
1,105,961 + 1.1
1,106,062 - 14229 mRNA_5861 0.11 2.6
1,106,085 + 14229 mRNA_5861 0.11 -0.7
1,106,095 + 14229 mRNA_5861 0.12 0.6
1,106,377 + 14229 mRNA_5861 0.21 0.2
1,106,378 - 14229 mRNA_5861 0.21 0.1
1,106,718 + 14229 mRNA_5861 0.32 1.1
1,106,981 + 14229 mRNA_5861 0.40 0.3
1,107,546 - 14229 mRNA_5861 0.59 0.3
1,108,137 + 14229 mRNA_5861 0.78 1.4
1,108,275 - 14229 mRNA_5861 0.82 0.4
1,108,442 - 14229 mRNA_5861 0.88 -0.2
1,108,550 - 0.5
1,108,572 - -0.1
1,108,624 + -0.2
1,108,717 - -2.3
1,108,722 + -0.1
1,108,731 - 0.8
1,108,846 - -0.3
1,108,893 + 0.4
1,108,902 + 0.7
1,108,908 - -0.7
1,108,918 + 1.0
1,108,927 + 0.6
1,108,934 - -1.0
1,108,979 + 0.7
1,108,981 + 3.1
1,109,022 - -0.0
1,109,030 + -0.8
1,109,034 - 0.3
1,109,049 - -1.1
1,109,052 - 0.2
1,109,074 - 0.0
1,109,085 + 1.4
1,109,122 - 0.4
1,109,126 - 0.2
1,109,148 - 0.9
1,109,157 + 0.3
1,109,179 - -0.3
1,109,197 + -0.8
1,109,207 - 1.9
1,109,226 + 0.4
1,109,286 - 0.6
1,109,290 + -0.4
1,109,306 + -1.0
1,109,320 + -1.5
1,109,324 + 1.0
1,109,329 + 1.1
1,109,334 + 1.5
1,109,342 + 0.8
1,109,352 - 0.5
1,109,364 - 0.2
1,109,429 - 3.4
1,109,467 + 0.8
1,109,470 + -0.0
1,109,508 - -0.4
1,109,618 - 0.2
1,109,640 - 1.1