Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5832

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5831: 14199 - KOG1198 Zinc-binding oxidoreductase, at 1043926 to 1045308 14199 mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1045581 to 1047659 14200 mRNA_5833: 14201 - K09705 K09705 uncharacterized protein, at 1047761 to 1048668 14201

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,044,597 - 14199 mRNA_5831 0.49 0.9
1,044,969 - 14199 mRNA_5831 0.75 1.6
1,045,059 - 14199 mRNA_5831 0.82 0.4
1,045,060 + 14199 mRNA_5831 0.82 0.6
1,045,070 + 14199 mRNA_5831 0.83 1.6
1,045,241 + 2.5
1,045,360 - 0.6
1,045,376 + 0.1
1,045,388 + 1.4
1,045,396 - 0.1
1,046,243 + 14200 mRNA_5832 0.32 0.6
1,046,537 + 14200 mRNA_5832 0.46 -0.3
1,046,538 - 14200 mRNA_5832 0.46 -0.1
1,046,547 + 14200 mRNA_5832 0.46 -1.3
1,046,553 + 14200 mRNA_5832 0.47 -1.6
1,047,878 - 14201 mRNA_5833 0.13 -0.6
1,048,201 - 14201 mRNA_5833 0.48 3.9
1,048,396 + 14201 mRNA_5833 0.70 0.4
1,048,429 - 14201 mRNA_5833 0.74 1.2
1,048,431 + 14201 mRNA_5833 0.74 -0.2
1,048,442 + 14201 mRNA_5833 0.75 -0.5
1,048,512 + 14201 mRNA_5833 0.83 -0.7
1,048,537 - 14201 mRNA_5833 0.85 2.8
1,048,539 + 14201 mRNA_5833 0.86 -0.1
1,048,554 - 14201 mRNA_5833 0.87 -0.5