Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5813

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993823 to 996800 14180 mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996990 to 1000538 14181 mRNA_5814: 14182 - K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6), at 1000707 to 1005630 14182

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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996,093 + 14180 mRNA_5812 0.76 0.1
996,911 - 0.7
996,947 - 0.0
996,957 - 2.3
996,964 - 1.3
996,967 - 0.9
997,279 - 0.6
997,297 + -0.3
997,313 - 0.6
997,429 - 14181 mRNA_5813 0.12 -1.4
997,536 + 14181 mRNA_5813 0.15 1.8
997,885 - 14181 mRNA_5813 0.25 1.1
997,929 - 14181 mRNA_5813 0.26 0.8
998,035 - 14181 mRNA_5813 0.29 1.3
998,156 + 14181 mRNA_5813 0.33 0.5
998,327 - 14181 mRNA_5813 0.38 -0.2
998,328 + 14181 mRNA_5813 0.38 0.5
998,328 + 14181 mRNA_5813 0.38 1.4
998,441 - 14181 mRNA_5813 0.41 0.7
998,473 - 14181 mRNA_5813 0.42 1.1
999,026 + 14181 mRNA_5813 0.57 2.9
999,041 + 14181 mRNA_5813 0.58 2.4
999,057 - 14181 mRNA_5813 0.58 0.7
999,214 + 14181 mRNA_5813 0.63 0.1
999,908 + 14181 mRNA_5813 0.82 1.4
999,941 - 14181 mRNA_5813 0.83 0.6
1,000,073 - 14181 mRNA_5813 0.87 0.7
1,000,213 - -0.3
1,000,219 + 0.4
1,000,222 - -0.5
1,000,368 + -0.3
1,000,368 + 1.9
1,000,514 + 0.8
1,000,653 - -0.3
1,000,657 + 2.2
1,000,660 - 0.1