Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5802

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972859 to 974663 14169 mRNA_5802: 14170 - K07441 ALG14 beta-1,4-N-acetylglucosaminyltransferase, at 974820 to 975968 14170 mRNA_5803: 14171 - Hypothetical Protein, at 976295 to 977367 14171

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
973,821 - 14169 mRNA_5801 0.53 0.6
973,951 + 14169 mRNA_5801 0.60 -0.5
974,411 - 14169 mRNA_5801 0.86 0.1
974,834 - 2.1
975,757 - 14170 mRNA_5802 0.82 -0.4
975,761 - 14170 mRNA_5802 0.82 0.3
975,771 - 14170 mRNA_5802 0.83 -0.1
975,771 - 14170 mRNA_5802 0.83 0.4
975,910 - 0.5
975,924 + -0.4
975,927 + -0.8
976,092 + 1.8
976,218 - -1.5
976,221 + -0.8
976,231 + 2.5
976,359 - 0.2
976,474 + 14171 mRNA_5803 0.17 1.0
976,500 - 14171 mRNA_5803 0.19 1.9
976,602 - 14171 mRNA_5803 0.29 -1.3
976,698 - 14171 mRNA_5803 0.38 -0.9
976,958 - 14171 mRNA_5803 0.62 -0.1