Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5800

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967190 to 969688 14167 mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970023 to 972593 14168 mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972859 to 974663 14169

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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969,706 - -1.0
969,718 + 0.9
969,735 + -0.5
969,819 + -0.2
969,867 - -1.2
969,883 + -2.3
969,906 + -1.5
969,933 - 0.5
969,972 - 0.5
969,974 + -0.1
970,184 + 0.5
970,225 + -0.0
970,328 + 14168 mRNA_5800 0.12 -2.5
970,337 - 14168 mRNA_5800 0.12 -1.4
970,337 - 14168 mRNA_5800 0.12 -0.2
970,450 - 14168 mRNA_5800 0.17 -1.5
970,450 + 14168 mRNA_5800 0.17 -0.4
970,611 + 14168 mRNA_5800 0.23 -0.2
971,023 + 14168 mRNA_5800 0.39 -0.2
971,052 + 14168 mRNA_5800 0.40 -0.5
971,178 + 14168 mRNA_5800 0.45 2.9
971,312 - 14168 mRNA_5800 0.50 -1.9
971,592 + 14168 mRNA_5800 0.61 -0.1
971,613 - 14168 mRNA_5800 0.62 1.9
971,775 - 14168 mRNA_5800 0.68 -0.1
972,037 - 14168 mRNA_5800 0.78 0.2
972,198 + 14168 mRNA_5800 0.85 0.8
972,210 + 14168 mRNA_5800 0.85 2.1
972,305 - 14168 mRNA_5800 0.89 1.7
972,321 - 14168 mRNA_5800 0.89 -0.7
972,357 + 0.6
972,483 - 0.3
972,490 + 0.9
972,512 + 0.5
972,563 - 0.3
972,625 + 0.8
972,630 + 0.1
972,638 + 1.0
972,648 - 0.5
972,652 + -0.2
972,778 - 1.0
972,798 - 1.0
972,799 + 1.1
972,810 + -0.4
972,929 - -1.9
972,932 - -1.4
973,101 - 14169 mRNA_5801 0.13 0.1
973,104 + 14169 mRNA_5801 0.14 0.6
973,123 + 14169 mRNA_5801 0.15 1.2
973,222 - 14169 mRNA_5801 0.20 0.8
973,224 - 14169 mRNA_5801 0.20 -0.2
973,232 + 14169 mRNA_5801 0.21 -0.0
973,243 + 14169 mRNA_5801 0.21 -0.5
973,402 + 14169 mRNA_5801 0.30 -1.4
973,501 + 14169 mRNA_5801 0.36 0.2