Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5797

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962183 to 965371 14165 mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965628 to 966973 14166

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
961,192 + -0.1
961,324 + 0.7
961,631 + -1.1
961,637 + -0.7
961,641 - -1.2
961,772 - 1.2
961,772 - 1.1
961,773 + 1.9
961,778 + 0.1
961,781 - -0.5
961,782 + 0.0
961,790 + -0.0
961,791 + 0.4
961,794 - 2.1
961,812 + 0.1
961,813 - 2.5
961,817 - 1.8
961,829 - 0.3
961,916 - 2.8
961,939 + -0.4
961,940 - 0.1
961,972 + 0.1
961,980 - 0.1
961,984 - 1.3
961,986 - 0.3
961,989 + 0.5
961,991 + -2.9
961,993 - 0.6
962,003 + -1.5
962,018 + 0.0
962,053 - -0.0
962,061 + 2.7
962,064 + 1.7
962,071 + 0.5
962,096 + -0.1
962,097 - 1.2
962,113 - 0.3
962,125 - -1.9
962,187 - -0.2
962,187 - 0.5
962,197 + -0.3
962,206 - 0.9
962,211 - -0.8
962,219 - 3.2
962,243 - -0.1
962,249 + 0.1
962,256 + -0.3
962,257 + -0.8
962,265 - 0.4
962,269 - 0.5
962,407 + -0.1
962,413 - 3.0
962,627 - 14165 mRNA_5797 0.14 -0.7
963,388 + 14165 mRNA_5797 0.38 -0.3
963,637 - 14165 mRNA_5797 0.46 -0.8
964,119 - 14165 mRNA_5797 0.61 4.4
964,128 + 14165 mRNA_5797 0.61 0.5
964,133 + 14165 mRNA_5797 0.61 1.7
964,157 - 14165 mRNA_5797 0.62 -0.7
964,302 + 14165 mRNA_5797 0.66 -0.3
964,650 - 14165 mRNA_5797 0.77 -0.0
964,716 - 14165 mRNA_5797 0.79 0.3
965,283 - 1.6
965,601 - 1.8
965,635 - 0.0
966,025 - 14166 mRNA_5798 0.29 -0.2
966,286 - 14166 mRNA_5798 0.49 0.8