Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5771

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904277 to 904949 14138 mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905200 to 913412 14139 mRNA_5772: 14140 - BLAST m serotype precursor [Moniliophthora roreri MCA 2..., at 913489 to 916106 14140

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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904,209 - 1.0
904,233 + -1.1
904,253 + 0.2
904,257 - 0.2
904,825 + 14138 mRNA_5770 0.81 -0.2
905,086 - -0.4
905,268 + 0.5
905,273 - -1.7
905,294 + -0.3
905,437 + 1.6
905,522 + 1.8
905,524 - 0.6
905,794 - 0.5
905,834 - -0.4
906,005 + 0.6
906,113 + 14139 mRNA_5771 0.11 2.0
906,115 - 14139 mRNA_5771 0.11 0.3
906,301 + 14139 mRNA_5771 0.13 1.7
906,323 + 14139 mRNA_5771 0.14 -0.4
906,415 - 14139 mRNA_5771 0.15 -1.2
906,581 - 14139 mRNA_5771 0.17 0.1
906,585 - 14139 mRNA_5771 0.17 2.2
906,601 + 14139 mRNA_5771 0.17 -0.8
906,755 - 14139 mRNA_5771 0.19 0.4
907,289 - 14139 mRNA_5771 0.25 1.2
907,441 - 14139 mRNA_5771 0.27 -2.3
909,786 + 14139 mRNA_5771 0.56 1.3
909,828 - 14139 mRNA_5771 0.56 -1.1
909,829 + 14139 mRNA_5771 0.56 1.2
910,412 + 14139 mRNA_5771 0.63 0.1
910,572 + 14139 mRNA_5771 0.65 2.6
910,972 - 14139 mRNA_5771 0.70 1.5
911,060 - 14139 mRNA_5771 0.71 -0.0
913,321 - -0.6
913,338 - 0.4
913,346 - 0.8
913,658 + -0.1
914,215 + 14140 mRNA_5772 0.28 -0.1
914,245 + 14140 mRNA_5772 0.29 -0.4
914,411 - 14140 mRNA_5772 0.35 -1.0