Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5755

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868685 to 870428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870782 to 872057 14124

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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867,691 - -0.2
867,713 + 0.5
867,722 + -1.0
867,727 - 1.8
867,731 + 0.0
867,741 - -1.1
867,741 - -0.2
867,742 + -0.7
867,742 + 2.0
867,745 + 0.3
867,746 + -0.9
867,749 + 2.5
867,750 - 0.8
867,762 - 0.6
867,766 - -1.5
867,769 + 3.5
867,880 + -1.2
867,906 + 1.0
868,162 + 0.2
868,173 - 0.7
868,203 + 1.7
868,617 + 0.4
868,777 + 0.7
868,793 + 0.1
868,796 - 4.1
868,921 + 14123 mRNA_5755 0.14 -1.5
868,925 - 14123 mRNA_5755 0.14 2.2
868,927 + 14123 mRNA_5755 0.14 0.3
868,943 - 14123 mRNA_5755 0.15 0.4
868,959 + 14123 mRNA_5755 0.16 0.3
868,973 - 14123 mRNA_5755 0.17 0.3
869,086 + 14123 mRNA_5755 0.23 0.3
869,816 - 14123 mRNA_5755 0.65 0.2
869,818 - 14123 mRNA_5755 0.65 -0.9
869,848 + 14123 mRNA_5755 0.67 3.5
869,983 - 14123 mRNA_5755 0.74 -1.0
870,019 - 14123 mRNA_5755 0.76 1.4
870,246 - 14123 mRNA_5755 0.90 1.0
870,268 + 1.6
870,308 - -0.7
870,414 - 1.6
870,535 - -2.0
870,682 - -1.8
870,722 + 0.6
870,724 + -0.2
870,726 + -0.7
870,751 + 0.4
870,787 + 1.2
870,876 + 0.1
870,881 - -0.1
871,154 - 14124 mRNA_5756 0.29 0.1