Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5743

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827493 to 828317 14110 mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828542 to 833992 14111 mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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827,545 + -0.3
827,547 - -0.2
827,547 - -0.4
827,547 - 0.7
827,549 - 2.3
827,585 - 14110 mRNA_5742 0.11 0.6
827,602 - 14110 mRNA_5742 0.13 0.0
827,647 + 14110 mRNA_5742 0.19 -0.6
827,711 - 14110 mRNA_5742 0.26 0.6
828,569 - -0.5
828,719 + -1.6
828,721 + -0.4
828,894 + 0.5
829,303 + 14111 mRNA_5743 0.14 -0.0
829,335 + 14111 mRNA_5743 0.15 0.1
829,484 - 14111 mRNA_5743 0.17 -0.4
829,730 - 14111 mRNA_5743 0.22 0.9
829,741 + 14111 mRNA_5743 0.22 1.1
829,775 - 14111 mRNA_5743 0.23 -1.3
829,842 - 14111 mRNA_5743 0.24 2.0
829,927 + 14111 mRNA_5743 0.25 0.6
829,934 - 14111 mRNA_5743 0.26 -1.0
830,231 - 14111 mRNA_5743 0.31 1.9
830,237 + 14111 mRNA_5743 0.31 2.5
830,528 + 14111 mRNA_5743 0.36 0.3
830,990 + 14111 mRNA_5743 0.45 2.7
831,189 + 14111 mRNA_5743 0.49 0.5
831,189 - 14111 mRNA_5743 0.49 -0.4
832,112 - 14111 mRNA_5743 0.65 0.3
832,248 - 14111 mRNA_5743 0.68 0.2
832,269 - 14111 mRNA_5743 0.68 -0.7
832,668 - 14111 mRNA_5743 0.76 0.9
833,139 + 14111 mRNA_5743 0.84 1.4
833,281 + 14111 mRNA_5743 0.87 -0.0
833,854 - 0.1
833,876 - 1.3
833,881 - 2.2
834,001 - 0.9
834,003 - 0.5
834,018 - 0.4
834,025 + 0.8
834,037 - -0.5
834,038 + -0.7
834,052 + 0.1
834,145 - -1.3
834,178 - 1.2
834,179 + 0.0
834,180 - 2.7
834,184 + 0.2
834,184 - -0.4
834,189 + 0.9
834,189 + -1.5
834,189 + 1.4
834,202 - -0.2
834,203 - -0.2
834,207 + -0.2
834,315 - 0.6
834,316 - 1.0
834,325 - -1.3
834,331 + 0.3
834,333 - 0.7
834,335 - 0.6
834,342 - -1.4
834,343 + 0.6
834,343 + 2.1
834,345 + 0.1
834,345 - 0.6
834,348 + 0.9
834,349 - 1.2
834,352 - 0.3
834,354 + 0.2
834,355 - 0.1
834,359 - -0.8
834,362 + 0.6
834,378 + -1.5
834,381 + 0.4
834,384 - -0.0
834,385 - 0.3
834,396 + 2.2
834,405 + 0.2
834,413 - 0.3
834,414 + 2.7
834,426 + 1.4
834,430 + 1.5
834,439 + 0.0
834,500 - 0.4
834,611 - -0.1
834,654 + 1.3
834,655 - 0.9
834,656 + 1.5
834,658 - -0.0
834,665 + 1.8
834,667 - -0.4
834,667 - -1.0
834,676 - -0.3
834,688 + 1.0
834,690 - 1.6