Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5716

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5715: 14083 - BLAST Elongator complex protein 4 [Ceraceosorus bombacis], at 757827 to 758501 14083 mRNA_5716: 14084 - Hypothetical Protein, at 759003 to 760646 14084 mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760959 to 763265 14085

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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758,059 + 14083 mRNA_5715 0.34 0.7
758,080 + 14083 mRNA_5715 0.37 -0.0
758,094 - 14083 mRNA_5715 0.40 -0.0
758,187 + 14083 mRNA_5715 0.53 0.4
758,370 - 14083 mRNA_5715 0.80 0.0
758,383 - 14083 mRNA_5715 0.82 0.3
758,500 + -0.4
758,509 + 1.5
758,819 - 0.8
758,823 + 0.9
758,834 - -0.8
758,845 - 0.0
758,884 - -0.9
758,885 - 0.7
758,891 - 0.1
758,894 + 0.8
758,895 + 0.6
758,901 + 0.2
758,902 - 0.3
758,904 - 0.0
758,916 - 0.2
758,926 - 1.3
758,933 + -0.6
758,936 - 0.2
758,937 - -0.6
758,944 + 0.9
758,957 + 0.1
758,963 + -0.3
758,976 - 0.1
759,091 - -0.1
759,112 + 0.2
759,135 + 0.8
759,227 - 14084 mRNA_5716 0.14 0.8
759,245 - 14084 mRNA_5716 0.15 -0.7
759,246 + 14084 mRNA_5716 0.15 -0.4
759,277 - 14084 mRNA_5716 0.17 -0.4
759,295 + 14084 mRNA_5716 0.18 1.0
759,300 - 14084 mRNA_5716 0.18 1.3
759,392 - 14084 mRNA_5716 0.24 0.2
759,400 + 14084 mRNA_5716 0.24 -0.6
759,556 + 14084 mRNA_5716 0.34 -0.2
759,569 - 14084 mRNA_5716 0.34 1.5
759,853 + 14084 mRNA_5716 0.52 -0.9
760,159 + 14084 mRNA_5716 0.70 0.3
760,299 + 14084 mRNA_5716 0.79 0.0
760,455 + 14084 mRNA_5716 0.88 1.8
760,559 - 0.4
760,871 - 2.5
760,872 - 0.2
760,878 + 0.6
760,880 - -0.2
760,882 - 2.7
760,886 + 2.9
760,899 + 1.1
760,899 + 2.5
760,901 + -0.2
761,037 + -0.4
761,041 + 1.4
761,064 - 0.5
761,208 + 14085 mRNA_5717 0.11 1.1
761,322 - 14085 mRNA_5717 0.16 -1.9
761,325 + 14085 mRNA_5717 0.16 -1.8
761,327 - 14085 mRNA_5717 0.16 -1.1
761,613 - 14085 mRNA_5717 0.28 -0.8