Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5702

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719283 to 720938 14068 mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721042 to 721632 14069 mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721912 to 723848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724681 to 726988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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720,940 - 0.8
721,397 + 14069 mRNA_5701 0.60 1.0
721,548 - 14069 mRNA_5701 0.86 0.8
721,557 + 14069 mRNA_5701 0.87 -1.5
721,686 + 3.0
721,686 - 1.6
721,689 + -0.4
721,693 + 1.2
721,699 + -0.3
721,704 + 1.1
721,711 + 0.2
721,712 + -0.1
721,714 - 0.2
721,816 - -0.8
721,816 + -0.2
721,818 + -0.9
721,826 - 0.3
721,836 - -1.2
721,836 - 0.1
721,842 + -0.2
721,844 + 0.1
721,856 - -0.4
721,861 + 0.8
721,993 - 0.9
721,994 + 0.0
722,144 - 14070 mRNA_5702 0.12 1.1
722,155 + 14070 mRNA_5702 0.13 -0.8
722,839 - 14070 mRNA_5702 0.48 -0.1
722,849 + 14070 mRNA_5702 0.48 2.2
723,014 + 14070 mRNA_5702 0.57 0.4
723,355 + 14070 mRNA_5702 0.74 0.5
723,872 - 0.6
724,175 - 2.0
724,196 + -1.3
724,307 - 1.2
724,316 - -0.6
724,325 - -1.4
724,329 - -0.1
724,339 + -1.5
724,352 + 0.6
724,370 + 0.6
724,447 + 0.1
724,455 - -1.0
724,479 + 0.8
724,588 + 1.2
724,629 - 1.0
724,634 - -1.9
724,635 + -0.2
724,640 - 0.9
724,641 + 0.7
724,642 + 0.3
724,646 + 1.3
724,646 + 0.2
724,776 - 1.3
724,778 - 0.7
724,780 - 0.5
724,797 - -0.6