Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5693

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5692: 14060 - K07342 SEC61G, SSS1, secE protein transport protein SEC61 subunit gamma and related proteins, at 703931 to 704550 14060 mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704894 to 706050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706295 to 707436 14062

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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704,591 + -0.5
704,730 - -2.9
704,739 + -1.9
705,309 - 14061 mRNA_5693 0.36 -0.0
705,625 - 14061 mRNA_5693 0.63 -0.3
705,655 - 14061 mRNA_5693 0.66 -2.4
705,786 - 14061 mRNA_5693 0.77 -0.4
705,788 + 14061 mRNA_5693 0.77 0.7
705,819 + 14061 mRNA_5693 0.80 -2.3
706,022 + 0.1
706,083 + 3.2
706,209 - 1.1
706,213 - -0.6
706,221 - 2.0
706,222 + 0.4
706,244 + 2.7
706,256 - 0.4
706,260 - 1.1
706,262 + -0.5
706,392 + 0.6
706,404 + -0.1
706,422 + 14062 mRNA_5694 0.11 1.3
706,433 + 14062 mRNA_5694 0.12 -1.2
706,435 + 14062 mRNA_5694 0.12 2.2
706,860 + 14062 mRNA_5694 0.49 1.8
706,872 - 14062 mRNA_5694 0.51 -0.1