Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5678

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672495 to 673304 14045 mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673852 to 675422 14046 mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675766 to 676852 14047

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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672,887 + 14045 mRNA_5677 0.48 0.1
672,891 - 14045 mRNA_5677 0.49 -0.2
672,896 + 14045 mRNA_5677 0.50 1.4
672,903 - 14045 mRNA_5677 0.50 -0.1
672,910 + 14045 mRNA_5677 0.51 -0.4
673,040 + 14045 mRNA_5677 0.67 -0.6
673,049 - 14045 mRNA_5677 0.68 -0.4
673,050 + 14045 mRNA_5677 0.69 -0.0
673,051 - 14045 mRNA_5677 0.69 3.5
673,072 - 14045 mRNA_5677 0.71 -0.9
673,347 + 1.2
673,458 - 1.7
673,493 + 1.7
673,628 - -2.4
673,631 - -0.6
673,645 + 0.1
673,651 - -0.6
673,657 - -0.4
673,661 + -1.0
673,662 + -1.3
673,670 + 1.1
673,673 - 0.6
673,678 + 1.4
673,680 - -2.3
673,680 + 1.8
673,680 - 1.3
673,684 + 1.5
673,703 - -0.6
673,707 + 1.0
673,709 + 0.3
673,710 + 0.0
673,721 + 1.3
673,740 - -1.1
673,796 - 1.9
673,797 + -0.0
673,798 + 0.1
673,831 + -0.6
673,861 - -0.8
673,890 + 0.9
673,911 + 0.7
673,911 + -0.5
674,048 + 14046 mRNA_5678 0.12 1.1
674,221 - 14046 mRNA_5678 0.23 -0.1
674,351 - 14046 mRNA_5678 0.32 -0.1
674,354 + 14046 mRNA_5678 0.32 -0.0
674,360 - 14046 mRNA_5678 0.32 -0.9
674,461 + 14046 mRNA_5678 0.39 0.9
674,811 - 14046 mRNA_5678 0.61 -1.5
674,817 - 14046 mRNA_5678 0.61 0.9
674,818 + 14046 mRNA_5678 0.61 1.1
675,042 + 14046 mRNA_5678 0.76 1.0
675,095 + 14046 mRNA_5678 0.79 1.5
675,215 - 14046 mRNA_5678 0.87 2.0
675,492 + -1.2
675,542 + 1.1
675,585 - -1.0
675,654 + 1.8
676,395 + 14047 mRNA_5679 0.58 0.6