Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5676

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5675: 14043 - Hypothetical Protein, at 667315 to 670414 14043 mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670458 to 672345 14044 mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672495 to 673304 14045

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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669,493 - 14043 mRNA_5675 0.70 0.1
669,555 + 14043 mRNA_5675 0.72 -1.0
669,728 + 14043 mRNA_5675 0.78 1.1
669,883 + 14043 mRNA_5675 0.83 -0.6
669,924 + 14043 mRNA_5675 0.84 1.4
670,175 - -0.4
670,178 + 0.0
670,202 - 0.3
670,238 + -0.3
670,406 - 0.3
670,411 + 0.0
670,424 - 0.7
670,699 + 14044 mRNA_5676 0.13 -0.4
670,702 + 14044 mRNA_5676 0.13 -0.8
670,876 - 14044 mRNA_5676 0.22 -0.1
672,163 + 2.3
672,184 + 0.5
672,452 + 1.9
672,470 - -0.4
672,497 + 0.4
672,594 - 14045 mRNA_5677 0.12 1.8
672,594 - 14045 mRNA_5677 0.12 0.1
672,631 + 14045 mRNA_5677 0.17 1.5
672,735 - 14045 mRNA_5677 0.30 1.2
672,751 - 14045 mRNA_5677 0.32 1.1
672,887 + 14045 mRNA_5677 0.48 0.1
672,891 - 14045 mRNA_5677 0.49 -0.2
672,896 + 14045 mRNA_5677 0.50 1.4
672,903 - 14045 mRNA_5677 0.50 -0.1
672,910 + 14045 mRNA_5677 0.51 -0.4
673,040 + 14045 mRNA_5677 0.67 -0.6
673,049 - 14045 mRNA_5677 0.68 -0.4
673,050 + 14045 mRNA_5677 0.69 -0.0
673,051 - 14045 mRNA_5677 0.69 3.5
673,072 - 14045 mRNA_5677 0.71 -0.9