Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5673

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661581 to 662502 14040 mRNA_5673: 14041 - Hypothetical Protein, at 663280 to 665489 14041 mRNA_5674: 14042 - K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3, at 666180 to 667115 14042

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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662,521 - -0.3
662,725 + 3.5
662,809 + 2.3
662,823 + 0.8
662,827 + -0.1
662,848 - -0.4
662,854 + 3.2
662,894 - -2.0
662,920 + 0.8
662,922 - 0.9
662,928 + -0.2
662,944 - -0.1
662,991 + -0.0
662,992 - 0.7
662,998 + -0.5
663,005 + -1.9
663,007 + 1.3
663,008 + 0.8
663,011 + 0.1
663,016 + 0.9
663,021 - 0.0
663,067 + 1.1
663,073 + 0.3
663,183 + 0.6
663,330 + -0.2
663,730 - 14041 mRNA_5673 0.20 2.7
664,070 + 14041 mRNA_5673 0.36 -0.0
664,217 - 14041 mRNA_5673 0.42 1.3
664,619 + 14041 mRNA_5673 0.61 -0.1
664,763 + 14041 mRNA_5673 0.67 1.4
664,794 - 14041 mRNA_5673 0.69 -0.0
665,075 - 14041 mRNA_5673 0.81 -0.5
665,347 + -2.3
665,357 + 0.6
665,444 + 0.5
665,583 - 0.2
665,634 + -0.2
665,760 + 2.0
665,886 + -0.5
665,902 + 1.7
666,050 - 1.6
666,065 - 1.1