Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5671

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653055 to 658546 14038 mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659400 to 661417 14039 mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661581 to 662502 14040

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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658,605 + 1.7
658,606 + -0.1
658,612 - 0.7
659,042 - -0.7
659,042 - 0.4
659,048 - -1.9
659,051 + 1.7
659,183 + -0.2
659,342 - -0.4
659,349 + 0.5
659,503 + 0.6
659,943 + 14039 mRNA_5671 0.27 0.6
660,343 - 14039 mRNA_5671 0.47 1.5
660,774 + 14039 mRNA_5671 0.68 1.5
660,786 - 14039 mRNA_5671 0.69 -0.8
660,951 - 14039 mRNA_5671 0.77 -1.4
660,965 + 14039 mRNA_5671 0.78 2.5
661,106 - 14039 mRNA_5671 0.85 -1.4
661,131 + 14039 mRNA_5671 0.86 -0.1
661,490 - 0.1
661,527 - -0.2
661,667 - 0.5
662,201 - 14040 mRNA_5672 0.67 1.5