Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5670

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651115 to 652658 14037 mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653055 to 658546 14038 mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659400 to 661417 14039

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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652,800 + 0.5
652,822 + 1.2
652,840 + 3.7
652,931 + 3.0
652,934 - -1.3
652,972 + 1.4
652,973 + 0.4
653,253 + -2.7
653,683 - 14038 mRNA_5670 0.11 0.7
653,921 - 14038 mRNA_5670 0.16 1.9
654,279 + 14038 mRNA_5670 0.22 -0.8
654,285 - 14038 mRNA_5670 0.22 1.1
654,429 - 14038 mRNA_5670 0.25 0.3
654,576 - 14038 mRNA_5670 0.28 -0.8
655,105 + 14038 mRNA_5670 0.37 -0.4
655,694 + 14038 mRNA_5670 0.48 0.9
655,826 + 14038 mRNA_5670 0.50 -0.4
655,873 - 14038 mRNA_5670 0.51 -0.4
655,930 + 14038 mRNA_5670 0.52 1.1
656,098 + 14038 mRNA_5670 0.55 -1.4
656,107 - 14038 mRNA_5670 0.56 0.5
656,552 - 14038 mRNA_5670 0.64 -0.4
656,842 + 14038 mRNA_5670 0.69 -0.1
656,882 + 14038 mRNA_5670 0.70 0.2
656,894 - 14038 mRNA_5670 0.70 2.9
657,150 - 14038 mRNA_5670 0.75 0.5
657,725 + 14038 mRNA_5670 0.85 -0.3
657,736 + 14038 mRNA_5670 0.85 -0.5
658,023 + 2.3
658,311 + 0.3
658,605 + 1.7
658,606 + -0.1
658,612 - 0.7
659,042 - -0.7
659,042 - 0.4
659,048 - -1.9
659,051 + 1.7
659,183 + -0.2
659,342 - -0.4
659,349 + 0.5
659,503 + 0.6