Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5653

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5652: 14020 - KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development, at 602133 to 602528 14020 mRNA_5653: 14021 - Hypothetical Protein, at 603450 to 604586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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602,582 - -0.1
602,618 + 0.6
603,372 + 0.1
603,609 + 14021 mRNA_5653 0.14 0.1
603,714 + 14021 mRNA_5653 0.23 -1.5
603,834 + 14021 mRNA_5653 0.34 -1.5
603,992 + 14021 mRNA_5653 0.48 -0.2
603,997 + 14021 mRNA_5653 0.48 0.7
604,075 - 14021 mRNA_5653 0.55 0.2
604,398 + 14021 mRNA_5653 0.83 1.8
604,546 - 0.2
604,660 - 0.1
604,709 - -1.1
604,809 + 0.1
604,811 + -0.7
604,813 - 1.0
604,850 - 0.7
604,891 - 0.0
604,893 + -1.0
604,897 - 1.8
604,900 + -0.2
604,915 + -1.1
604,916 + 1.2
604,928 - 3.8
604,928 - 1.3
604,928 - -0.5
604,934 - 1.6
604,945 - 0.2
604,987 - 1.5
604,988 - 1.3
605,001 + 0.0
605,005 - -0.3
605,005 + -0.6
605,178 - 0.6
605,456 + 14022 mRNA_5654 0.11 -1.3
605,569 + 14022 mRNA_5654 0.16 -1.0