Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5645

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5644: 14012 - Hypothetical Protein, at 583736 to 584443 14012 mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584713 to 586254 14013 mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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583,829 - 14012 mRNA_5644 0.13 2.1
583,956 - 14012 mRNA_5644 0.31 0.1
584,058 + 14012 mRNA_5644 0.45 -0.2
584,472 - -0.5
584,666 + -0.6
584,784 - -0.8
584,975 - 14013 mRNA_5645 0.17 0.3
585,103 + 14013 mRNA_5645 0.25 -0.3
585,353 + 14013 mRNA_5645 0.42 0.6
585,542 - 14013 mRNA_5645 0.54 -1.2
585,817 + 14013 mRNA_5645 0.72 1.2
585,839 - 14013 mRNA_5645 0.73 0.4
585,844 + 14013 mRNA_5645 0.73 -1.0
585,872 + 14013 mRNA_5645 0.75 -0.1
586,004 - 14013 mRNA_5645 0.84 0.3
586,166 + 0.4
586,166 + -0.3
586,167 + -1.0
586,283 - -0.9
586,304 - -0.0
586,310 - -1.1
586,316 + 0.4
586,325 + 0.0
586,332 + -1.4
586,333 + 0.3
586,333 - 1.3
586,333 - -0.2
586,354 + -0.4
586,381 - -0.3
586,400 - 1.8
586,407 + -0.6
586,413 + -1.9
586,428 + 0.2
586,435 + 1.2
586,435 + 0.0
586,435 + 0.1
586,442 - 1.2
586,453 + -0.3
586,457 + 0.8
586,464 + 0.0
586,464 - 0.2
586,601 + -0.0
586,609 - 1.4
586,638 + 14014 mRNA_5646 0.12 1.2
586,877 + 14014 mRNA_5646 0.27 -2.2
586,906 + 14014 mRNA_5646 0.29 0.9
587,037 - 14014 mRNA_5646 0.38 -2.4