Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5637

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564941 to 566584 14004 mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566875 to 570624 14005 mRNA_5638: 14006 - Hypothetical Protein, at 570923 to 572239 14006

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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565,890 + 14004 mRNA_5636 0.58 -1.0
566,035 - 14004 mRNA_5636 0.67 1.5
566,039 + 14004 mRNA_5636 0.67 0.9
566,040 + 14004 mRNA_5636 0.67 -0.3
566,196 + 14004 mRNA_5636 0.76 0.0
566,197 + 14004 mRNA_5636 0.76 0.6
566,354 - 14004 mRNA_5636 0.86 0.4
566,364 + 14004 mRNA_5636 0.87 -0.3
566,483 - -2.1
566,500 + -1.3
566,662 + 2.5
566,673 + 1.7
566,789 - 2.3
566,822 - 1.4
567,038 - 2.1
567,375 + 14005 mRNA_5637 0.13 0.0
567,640 - 14005 mRNA_5637 0.20 1.3
567,711 - 14005 mRNA_5637 0.22 2.4
567,958 + 14005 mRNA_5637 0.29 0.2
568,009 - 14005 mRNA_5637 0.30 0.8
568,143 + 14005 mRNA_5637 0.34 -0.7
568,257 - 14005 mRNA_5637 0.37 0.7
569,163 - 14005 mRNA_5637 0.61 0.4
569,232 + 14005 mRNA_5637 0.63 0.1
569,245 - 14005 mRNA_5637 0.63 1.0
569,901 - 14005 mRNA_5637 0.81 -0.4
570,039 + 14005 mRNA_5637 0.84 -0.4
570,048 + 14005 mRNA_5637 0.85 -0.8
570,145 - 14005 mRNA_5637 0.87 0.7
570,180 - 14005 mRNA_5637 0.88 1.2
570,329 - -1.4
570,451 + 1.3
570,458 + 1.4
570,461 - 2.5
570,469 + 1.6
570,473 + 0.3
570,589 + 0.1
570,769 + 0.4
570,784 + -0.9
570,784 - 0.4
570,788 - 0.5
571,219 - 14006 mRNA_5638 0.22 -0.4
571,392 + 14006 mRNA_5638 0.36 -0.3
571,537 - 14006 mRNA_5638 0.47 -0.1
571,544 + 14006 mRNA_5638 0.47 0.2
571,549 + 14006 mRNA_5638 0.48 0.1