Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5636

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564046 to 564667 14003 mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564941 to 566584 14004 mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566875 to 570624 14005

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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563,984 - -1.3
564,021 - 1.8
564,409 - 14003 mRNA_5635 0.58 -2.6
564,705 + 0.6
564,715 - -0.4
564,716 + -0.0
564,720 + 0.1
564,835 - -0.6
564,870 - 0.2
564,987 - 0.1
565,166 + 14004 mRNA_5636 0.14 -0.1
565,328 - 14004 mRNA_5636 0.24 -0.5
565,865 - 14004 mRNA_5636 0.56 -1.1
565,890 + 14004 mRNA_5636 0.58 -1.0
566,035 - 14004 mRNA_5636 0.67 1.5
566,039 + 14004 mRNA_5636 0.67 0.9
566,040 + 14004 mRNA_5636 0.67 -0.3
566,196 + 14004 mRNA_5636 0.76 0.0
566,197 + 14004 mRNA_5636 0.76 0.6
566,354 - 14004 mRNA_5636 0.86 0.4
566,364 + 14004 mRNA_5636 0.87 -0.3
566,483 - -2.1
566,500 + -1.3
566,662 + 2.5
566,673 + 1.7
566,789 - 2.3
566,822 - 1.4
567,038 - 2.1
567,375 + 14005 mRNA_5637 0.13 0.0