Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5634

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5633: 14001 - K01679 E4.2.1.2B, fumC fumarate hydratase, class II, at 558284 to 560290 14001 mRNA_5634: 14002 - K00750 GYG1, GYG2 glycogenin, at 560613 to 563450 14002 mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564046 to 564667 14003

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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560,433 + -0.5
560,438 - -0.5
560,448 + -0.3
560,540 - 2.3
560,561 - -0.6
560,582 - -0.2
560,619 + 1.6
560,880 - 1.5
560,886 - -0.4
560,891 + -1.2
560,942 - 14002 mRNA_5634 0.12 -0.3
561,030 + 14002 mRNA_5634 0.15 1.2
561,031 + 14002 mRNA_5634 0.15 1.4
561,040 + 14002 mRNA_5634 0.15 -0.6
561,054 + 14002 mRNA_5634 0.16 -0.4
561,066 - 14002 mRNA_5634 0.16 -1.4
561,116 + 14002 mRNA_5634 0.18 -0.0
561,179 - 14002 mRNA_5634 0.20 -0.7
561,209 - 14002 mRNA_5634 0.21 0.0
561,337 - 14002 mRNA_5634 0.26 -1.7
561,416 + 14002 mRNA_5634 0.28 -2.4
561,806 + 14002 mRNA_5634 0.42 0.4
561,975 - 14002 mRNA_5634 0.48 -1.5
562,051 - 14002 mRNA_5634 0.51 -0.7
562,080 - 14002 mRNA_5634 0.52 -0.0
562,083 + 14002 mRNA_5634 0.52 1.3
562,214 - 14002 mRNA_5634 0.56 -1.0
562,257 + 14002 mRNA_5634 0.58 1.1
562,663 - 14002 mRNA_5634 0.72 0.1
562,958 + 14002 mRNA_5634 0.83 0.8
563,109 + 14002 mRNA_5634 0.88 -0.1
563,379 - 0.1
563,541 - 1.0
563,791 + 1.7
563,984 - -1.3
564,021 - 1.8
564,409 - 14003 mRNA_5635 0.58 -2.6