Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5631

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999 mRNA_5632: 14000 - Hypothetical Protein, at 557069 to 557641 14000

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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551,479 + 13998 mRNA_5630 0.80 -0.7
551,779 - 2.2
551,793 + 0.2
551,808 + 0.5
551,840 + -0.3
551,842 - 3.3
551,942 - 0.2
551,945 - 0.6
551,957 - -0.7
551,961 + -1.1
551,963 - 0.8
551,964 + -0.6
551,966 + -2.2
551,971 + 2.1
551,977 + -0.6
551,979 + -0.0
551,979 + 1.9
552,118 + 0.0
552,233 + 2.3
552,418 + 2.0
552,994 - 13999 mRNA_5631 0.15 0.6
553,584 - 13999 mRNA_5631 0.29 0.1
553,952 - 13999 mRNA_5631 0.37 0.6
554,057 - 13999 mRNA_5631 0.40 1.8
554,120 - 13999 mRNA_5631 0.41 0.7
554,121 + 13999 mRNA_5631 0.41 -0.8
554,414 - 13999 mRNA_5631 0.48 0.3
554,484 - 13999 mRNA_5631 0.50 0.2
554,590 - 13999 mRNA_5631 0.52 2.8
554,645 + 13999 mRNA_5631 0.53 2.3
554,978 - 13999 mRNA_5631 0.61 1.0
555,031 - 13999 mRNA_5631 0.62 1.7
555,146 + 13999 mRNA_5631 0.65 2.9
555,355 + 13999 mRNA_5631 0.70 -1.5
555,667 - 13999 mRNA_5631 0.77 1.0
555,668 - 13999 mRNA_5631 0.77 -0.1
555,802 + 13999 mRNA_5631 0.80 -1.1
555,803 - 13999 mRNA_5631 0.80 1.9
556,438 - -0.8
556,528 - 1.3
556,568 + 3.4
556,658 - 0.1
556,685 + 0.2
556,831 - -0.1
556,949 + -0.4
557,273 - 14000 mRNA_5632 0.36 1.6
557,280 - 14000 mRNA_5632 0.37 -1.9
557,288 + 14000 mRNA_5632 0.38 1.2
557,293 + 14000 mRNA_5632 0.39 2.0
557,293 + 14000 mRNA_5632 0.39 -0.7
557,300 + 14000 mRNA_5632 0.40 -1.5
557,419 + 14000 mRNA_5632 0.61 -0.1
557,437 + 14000 mRNA_5632 0.64 0.1
557,446 + 14000 mRNA_5632 0.66 2.4