Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5621

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528663 to 529956 13988 mRNA_5621: 13989 - Hypothetical Protein, at 530337 to 531503 13989 mRNA_5622: 13990 - K00849 galK galactokinase, at 531659 to 534063 13990

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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529,954 - 0.3
529,955 + 0.4
529,957 + -2.2
529,966 - -1.1
530,050 + -0.3
530,081 - 3.2
530,082 + 1.5
530,083 + -0.3
530,136 + 1.1
531,002 + 13989 mRNA_5621 0.57 0.8
531,108 - 13989 mRNA_5621 0.66 0.9
531,251 + 13989 mRNA_5621 0.78 1.5
531,372 - 13989 mRNA_5621 0.89 1.3
531,393 + 0.5
531,404 + -2.0
531,404 + 3.5
531,563 - 1.5
531,663 - -0.5
531,664 + 0.0
531,673 - 2.3
531,679 + -0.1
531,679 - -0.5
531,690 - 0.9
531,698 - -1.8
531,700 + 1.6
531,822 - -1.0
531,841 + -0.4
531,881 - 0.6
531,914 - 13990 mRNA_5622 0.11 -0.4
531,958 - 13990 mRNA_5622 0.12 -0.2
531,961 - 13990 mRNA_5622 0.13 -0.3
531,970 + 13990 mRNA_5622 0.13 0.0
531,979 - 13990 mRNA_5622 0.13 -0.8
531,983 - 13990 mRNA_5622 0.13 0.8
531,984 + 13990 mRNA_5622 0.14 -1.7
531,987 - 13990 mRNA_5622 0.14 -0.4
532,002 + 13990 mRNA_5622 0.14 2.3
532,003 + 13990 mRNA_5622 0.14 1.4
532,127 - 13990 mRNA_5622 0.19 0.2
532,142 - 13990 mRNA_5622 0.20 -0.6
532,291 - 13990 mRNA_5622 0.26 -1.9
532,424 - 13990 mRNA_5622 0.32 0.7