Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5611

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507663 to 510497 13979 mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510647 to 512391 13980

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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506,820 + 13978 mRNA_5610 0.79 2.8
506,991 + 13978 mRNA_5610 0.85 -1.4
507,001 + 13978 mRNA_5610 0.85 -0.6
507,269 - 0.1
507,284 - 0.4
507,292 + 1.1
507,378 + 0.4
507,570 - -0.6
507,594 + 0.5
507,611 - -0.1
508,178 - 13979 mRNA_5611 0.18 2.0
510,099 + 13979 mRNA_5611 0.86 0.7
510,378 - -0.8
510,716 - -0.4
511,012 - 13980 mRNA_5612 0.21 -1.4
511,029 - 13980 mRNA_5612 0.22 0.9
511,464 - 13980 mRNA_5612 0.47 -1.2