Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5608

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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493,908 - 0.3
493,924 + 0.3
494,365 + -2.2
494,552 + 0.7
494,656 + 0.0
494,803 + -1.2
494,809 - -1.9
494,826 + 1.3
495,280 + 0.1
500,717 + 13976 mRNA_5608 0.84 -0.0
500,858 + 13976 mRNA_5608 0.86 1.6
501,868 - 2.6
502,016 - 2.9
502,129 - 0.1
502,143 - -0.4
502,152 - 0.1
502,153 - -0.3
502,154 + 0.1
502,157 - -0.1
502,293 - -1.0
502,452 - -0.2
502,473 - 13977 mRNA_5609 0.10 2.2
502,477 + 13977 mRNA_5609 0.11 0.6
502,477 + 13977 mRNA_5609 0.11 1.4
502,748 + 13977 mRNA_5609 0.22 0.2