Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5603

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483682 to 484493 13970 mRNA_5603: 13971 - K09523 DNAJC3 DnaJ homolog subfamily C member 3, at 484833 to 486890 13971 mRNA_5604: 13972 - Hypothetical Protein, at 487257 to 489515 13972

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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484,379 + 13970 mRNA_5602 0.86 -0.0
484,571 - 0.4
484,576 + -0.1
484,578 + 0.8
484,587 - 0.0
484,589 - 1.7
484,595 - -0.4
484,604 + 0.1
484,674 - -0.6
484,706 - 0.2
484,729 - 0.1
484,750 + 1.2
484,753 - -0.0
484,876 - 0.8
484,889 - 0.5
484,893 - 1.0
484,900 - 0.7
484,907 - 0.8
484,913 - 2.0
484,913 + -0.4
485,042 + 13971 mRNA_5603 0.10 0.4
485,059 + 13971 mRNA_5603 0.11 2.4
485,195 - 13971 mRNA_5603 0.18 -1.3
485,495 + 13971 mRNA_5603 0.32 0.6
485,518 + 13971 mRNA_5603 0.33 1.1
485,769 - 13971 mRNA_5603 0.45 0.7
485,953 - 13971 mRNA_5603 0.54 0.7
486,656 - 13971 mRNA_5603 0.89 1.9
486,690 + -0.7
486,690 + 0.2
486,692 + -0.0
486,817 + 0.7
487,062 - 1.1
487,103 - 0.2
487,698 + 13972 mRNA_5604 0.20 -0.2
487,733 - 13972 mRNA_5604 0.21 0.2