Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5601

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968 mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481051 to 483053 13969 mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483682 to 484493 13970

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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480,195 + 13968 mRNA_5600 0.66 -0.6
480,211 - 13968 mRNA_5600 0.67 0.3
480,339 - 13968 mRNA_5600 0.75 -0.3
480,357 + 13968 mRNA_5600 0.76 -0.5
480,522 + 13968 mRNA_5600 0.85 -0.6
480,649 - 0.9
480,659 + 0.1
480,791 + 1.9
481,805 - 13969 mRNA_5601 0.38 1.6
481,944 - 13969 mRNA_5601 0.45 -1.4
481,984 + 13969 mRNA_5601 0.47 0.8
482,243 + 13969 mRNA_5601 0.60 0.6
482,717 - 13969 mRNA_5601 0.83 0.5
482,732 - 13969 mRNA_5601 0.84 0.6
482,833 - 13969 mRNA_5601 0.89 0.2
482,848 + 13969 mRNA_5601 0.90 1.3
482,969 - 1.1
483,425 - 0.0
483,569 + 2.1