Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5599

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5598: 13966 - KOG0118 FOG RRM domain, at 474328 to 475458 13966 mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475591 to 478385 13967 mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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475,750 + 1.4
475,751 + 1.1
475,752 + 0.9
475,761 + 0.1
475,766 - -0.3
475,771 + 0.5
475,777 + 1.2
475,921 + 13967 mRNA_5599 0.12 0.2
475,922 - 13967 mRNA_5599 0.12 -1.5
475,932 - 13967 mRNA_5599 0.12 0.3
475,933 - 13967 mRNA_5599 0.12 -0.3
475,947 + 13967 mRNA_5599 0.13 -2.8
475,950 + 13967 mRNA_5599 0.13 0.8
475,954 + 13967 mRNA_5599 0.13 1.1
475,984 - 13967 mRNA_5599 0.14 1.8
476,074 - 13967 mRNA_5599 0.17 0.1
476,078 - 13967 mRNA_5599 0.17 0.1
476,088 - 13967 mRNA_5599 0.18 0.4
476,093 - 13967 mRNA_5599 0.18 0.3
476,100 + 13967 mRNA_5599 0.18 1.0
476,100 + 13967 mRNA_5599 0.18 1.0
476,104 - 13967 mRNA_5599 0.18 -1.0
476,105 - 13967 mRNA_5599 0.18 3.8
476,105 + 13967 mRNA_5599 0.18 0.6
476,122 + 13967 mRNA_5599 0.19 1.0
476,141 - 13967 mRNA_5599 0.20 -2.3
476,142 - 13967 mRNA_5599 0.20 2.9
476,152 - 13967 mRNA_5599 0.20 -0.9
476,177 + 13967 mRNA_5599 0.21 -0.8
476,199 + 13967 mRNA_5599 0.22 1.0
476,290 + 13967 mRNA_5599 0.25 0.4
476,296 - 13967 mRNA_5599 0.25 3.6
476,326 + 13967 mRNA_5599 0.26 2.3
476,326 + 13967 mRNA_5599 0.26 -0.0
476,339 - 13967 mRNA_5599 0.27 0.1
476,352 - 13967 mRNA_5599 0.27 0.4
476,363 - 13967 mRNA_5599 0.28 -0.3
476,364 - 13967 mRNA_5599 0.28 -0.4
476,364 - 13967 mRNA_5599 0.28 -1.8
476,365 + 13967 mRNA_5599 0.28 -1.3
476,368 - 13967 mRNA_5599 0.28 -2.1
476,377 + 13967 mRNA_5599 0.28 1.1
476,378 + 13967 mRNA_5599 0.28 0.8
476,379 - 13967 mRNA_5599 0.28 0.2
476,382 - 13967 mRNA_5599 0.28 0.5
476,393 - 13967 mRNA_5599 0.29 -0.4
476,401 - 13967 mRNA_5599 0.29 2.4
476,410 + 13967 mRNA_5599 0.29 1.1
476,410 - 13967 mRNA_5599 0.29 0.5
476,411 + 13967 mRNA_5599 0.29 -1.0
476,429 + 13967 mRNA_5599 0.30 0.1
476,437 - 13967 mRNA_5599 0.30 -1.6
476,442 - 13967 mRNA_5599 0.30 0.2
476,444 - 13967 mRNA_5599 0.31 -0.0
476,446 - 13967 mRNA_5599 0.31 0.6
476,448 + 13967 mRNA_5599 0.31 3.1
476,449 + 13967 mRNA_5599 0.31 0.4
476,453 + 13967 mRNA_5599 0.31 0.6
476,463 + 13967 mRNA_5599 0.31 2.2
476,465 + 13967 mRNA_5599 0.31 1.3
476,468 + 13967 mRNA_5599 0.31 -0.7
476,469 + 13967 mRNA_5599 0.31 0.7
476,477 + 13967 mRNA_5599 0.32 -0.4
476,586 + 13967 mRNA_5599 0.36 -0.3
476,601 + 13967 mRNA_5599 0.36 0.1
476,602 + 13967 mRNA_5599 0.36 0.2
476,602 + 13967 mRNA_5599 0.36 1.4
476,613 + 13967 mRNA_5599 0.37 -0.0
476,739 + 13967 mRNA_5599 0.41 1.7
476,892 + 13967 mRNA_5599 0.47 0.9
476,916 + 13967 mRNA_5599 0.47 -0.5
477,292 + 13967 mRNA_5599 0.61 -0.3
477,302 - 13967 mRNA_5599 0.61 0.2
477,328 + 13967 mRNA_5599 0.62 0.4
477,422 + 13967 mRNA_5599 0.66 1.3
477,534 - 13967 mRNA_5599 0.70 0.3
477,797 + 13967 mRNA_5599 0.79 -2.3
477,838 - 13967 mRNA_5599 0.80 -0.3
477,916 + 13967 mRNA_5599 0.83 0.5
478,137 - 1.5
478,453 - -0.7
478,491 - 0.3
478,718 + -0.5
478,867 - -0.0
478,874 - 0.5