Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5594

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465150 to 466141 13962 mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466415 to 467468 13963

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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464,184 + 13961 mRNA_5593 0.60 0.5
464,274 + 13961 mRNA_5593 0.65 1.8
464,286 + 13961 mRNA_5593 0.66 -0.2
464,289 - 13961 mRNA_5593 0.66 0.3
464,345 - 13961 mRNA_5593 0.69 1.9
464,609 + 13961 mRNA_5593 0.84 0.2
464,645 + 13961 mRNA_5593 0.86 0.2
464,779 - 1.1
464,800 + -1.2
464,898 + 0.1
464,917 - -1.3
464,925 + 0.4
464,926 + -0.4
464,928 + 0.8
464,931 - 0.3
464,935 - 1.8
464,952 - 2.2
465,074 - 2.4
465,084 + -0.2
465,087 + 1.6
465,098 + -0.3
465,217 + 0.2
465,232 + -1.2
465,941 + 13962 mRNA_5594 0.80 0.1
465,949 + 13962 mRNA_5594 0.81 -0.2
466,084 + 1.8
466,092 + 1.4
466,221 + -2.4
466,226 + 3.7
466,350 - 0.5
466,371 - 1.9
466,374 + 0.4
466,386 + -0.3
466,409 + -0.2
466,517 + 0.9