Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5586

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440845 to 442225 13954 mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442460 to 444934 13955

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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439,895 + 0.3
439,895 + -0.6
440,058 + -0.6
440,084 - 2.1
440,098 + -1.1
440,129 - 0.7
440,166 - -0.6
440,205 + 0.1
440,208 + 3.6
440,212 - -0.1
440,237 - -1.2
440,238 - 2.1
440,242 - 0.2
440,373 - 0.8
440,374 - 1.3
440,436 - 1.3
440,441 + 0.4
440,451 - -0.1
440,463 - -2.0
440,560 - -0.8
440,566 - 0.8
440,572 - -0.5
440,587 - 0.5
440,591 - -3.4
440,593 - 2.0
440,598 + -0.6
440,750 + 0.4
440,781 - 0.4
440,828 - -0.1
440,887 + 1.0
440,903 + -0.5
441,047 + 13954 mRNA_5586 0.15 0.2
441,047 + 13954 mRNA_5586 0.15 0.1
441,162 + 13954 mRNA_5586 0.23 0.5
441,174 + 13954 mRNA_5586 0.24 -2.1
441,192 - 13954 mRNA_5586 0.25 0.3
441,192 + 13954 mRNA_5586 0.25 -1.4
441,194 + 13954 mRNA_5586 0.25 1.0
441,200 - 13954 mRNA_5586 0.26 -1.9
441,200 + 13954 mRNA_5586 0.26 0.4
441,206 - 13954 mRNA_5586 0.26 0.8
441,210 - 13954 mRNA_5586 0.26 1.0
441,211 + 13954 mRNA_5586 0.27 0.9
441,221 + 13954 mRNA_5586 0.27 -1.3
441,225 + 13954 mRNA_5586 0.28 2.0
441,227 - 13954 mRNA_5586 0.28 -1.0
441,238 + 13954 mRNA_5586 0.28 0.3
441,238 + 13954 mRNA_5586 0.28 0.3
441,356 + 13954 mRNA_5586 0.37 0.3
441,679 - 13954 mRNA_5586 0.60 0.2
441,683 + 13954 mRNA_5586 0.61 -0.0
442,074 + 13954 mRNA_5586 0.89 -0.7
442,339 - -0.2
442,397 + 2.9
442,398 + -0.1
442,400 + -1.5
442,401 - 0.5
442,408 + 0.6
442,419 - 2.1
442,425 - 0.3
442,539 - 2.4
442,544 - -1.5
442,557 - 0.9