Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5558

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375495 to 376430 13925 mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376866 to 377685 13926 mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377772 to 380881 13927

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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375,894 + 13925 mRNA_5557 0.43 0.6
376,039 + 13925 mRNA_5557 0.58 -0.2
376,176 - 13925 mRNA_5557 0.73 -1.4
376,182 - 13925 mRNA_5557 0.73 2.8
376,191 + 13925 mRNA_5557 0.74 -0.7
376,192 + 13925 mRNA_5557 0.74 0.4
376,192 + 13925 mRNA_5557 0.74 1.4
376,201 + 13925 mRNA_5557 0.75 3.4
376,329 - 13925 mRNA_5557 0.89 1.2
376,496 + -0.6
376,500 - 0.7
376,613 - -0.2
376,737 + 1.1
376,750 - -1.2
376,751 + 2.1
376,754 - -2.8
376,771 + 0.0
376,771 + -0.6
376,772 + 0.5
376,776 - -1.2
376,912 - 0.5
376,928 + 1.4
376,963 - 13926 mRNA_5558 0.12 0.3
377,207 - 13926 mRNA_5558 0.42 -2.4
377,212 + 13926 mRNA_5558 0.42 0.1
377,422 + 13926 mRNA_5558 0.68 -0.6
377,540 - 13926 mRNA_5558 0.82 1.6